> AWS HealthOmics variant stores and annotation stores are no longer open to new customers.

Existing customers can continue to use the service as normal. For more information, see [AWS HealthOmics variant store and annotation store availability change](https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html) .

Creates an annotation store.

CfnAnnotationStore

name

storeFormat

description

The genome reference for the store's annotations.

reference

The store's server-side encryption (SSE) settings.

sseConfig

File parsing options for the annotation store.

storeOptions

CfnConfiguration

User-friendly name for the configuration.

runConfigurations

Optional description for the configuration.

CfnReferenceStore

Server-side encryption (SSE) settings for the store.

Creates a run group to limit the compute resources for the runs that are added to the group.

Returns an ARN, ID, and tags for the run group.

CfnRunGroup

maxCpus

The group's maximum duration setting in minutes.

maxDuration

The maximum GPUs that can be used by a run group.

maxGpus

The group's maximum concurrent run setting.

maxRuns

CfnSequenceStore

accessLogLocation

eTagAlgorithmFamily

An S3 location that is used to store files that have failed a direct upload.

fallbackLocation

The tags keys to propagate to the S3 objects associated with read sets in the sequence store.

propagatedSetLevelTags

The resource policy that controls S3 access on the store.

s3AccessPolicy

CfnVariantStore

The genome reference for the store's variants.

Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:.

- *Workflow definition file:* A workflow definition file written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in `.zip` format. For more information, see [Workflow definition files](https://docs.aws.amazon.com/omics/latest/dev/workflow-definition-files.html) in AWS HealthOmics.

- You can use Amazon Q CLI to build and validate your workflow definition files in WDL, Nextflow, and CWL. For more information, see [Example prompts for Amazon Q CLI](https://docs.aws.amazon.com/omics/latest/dev/getting-started.html#omics-q-prompts) and the [AWS HealthOmics Agentic generative AI tutorial](https://docs.aws.amazon.com/https://github.com/aws-samples/aws-healthomics-tutorials/tree/main/generative-ai) on GitHub.
- *(Optional) Parameter template file:* A parameter template file written in JSON. Create the file to define the run parameters, or AWS HealthOmics generates the parameter template for you. For more information, see [Parameter template files for HealthOmics workflows](https://docs.aws.amazon.com/omics/latest/dev/parameter-templates.html) .
- *ECR container images:* Create container images for the workflow in a private ECR repository, or synchronize images from a supported upstream registry with your Amazon ECR private repository.
- *(Optional) Sentieon licenses:* Request a Sentieon license to use the Sentieon software in private workflows.

For more information, see [Creating or updating a private workflow in AWS HealthOmics](https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html) in the *AWS HealthOmics User Guide* .

CfnWorkflow

accelerators

Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries.

For more information, see [Container images](https://docs.aws.amazon.com/omics/latest/dev/workflows-ecr.html) in the *AWS HealthOmics User Guide* .

containerRegistryMap

containerRegistryMapUri

Contains information about a source code repository that hosts the workflow definition files.

definitionRepository

The URI of a definition for the workflow.

definitionUri

engine

The path of the main definition file for the workflow.

main

parameterTemplate

Path to the primary workflow parameter template JSON file inside the repository.

parameterTemplatePath

The markdown content for the workflow's README file.

This provides documentation and usage information for users of the workflow.

readmeMarkdown

The path to the workflow README markdown file within the repository.

This file provides documentation and usage information for the workflow. If not specified, the README.md file from the root directory of the repository will be used.

readmePath

The S3 URI of the README file for the workflow.

This file provides documentation and usage information for the workflow. The S3 URI must begin with s3://USER-OWNED-BUCKET/. The requester must have access to the S3 bucket and object. The max README content length is 500 KiB.

readmeUri

The default static storage capacity (in gibibytes) for runs that use this workflow or workflow version.

The `storageCapacity` can be overwritten at run time. The storage capacity is not required for runs with a `DYNAMIC` storage type.

storageCapacity

storageType

Optional workflow bucket owner ID to verify the workflow bucket.

workflowBucketOwnerId

Creates a new workflow version for the workflow that you specify with the `workflowId` parameter.

When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.

Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.

> Don't include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.

For more information, see [Workflow versioning in AWS HealthOmics](https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html) in the *AWS HealthOmics User Guide* .

AWS omics

L1 Constructs8

CfnAnnotationStore

CfnConfiguration

CfnReferenceStore

CfnRunGroup

CfnSequenceStore

CfnVariantStore

CfnWorkflow

CfnWorkflowVersion

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